Cloud masking
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[[File:Qgis_cloud_dilate.png|300px]] | [[File:Qgis_cloud_dilate.png|300px]] | ||
# Convert the Feature Output Imge from raster to vector format. {{mitem|text= Raster --> Conversion --> Polygonize}}. Select an output file name for vector polygons. | # Convert the Feature Output Imge from raster to vector format. {{mitem|text= Raster --> Conversion --> Polygonize}}. Select an output file name for vector polygons. | ||
| − | [[File:Qgis_cloud_polygonize.png| | + | [[File:Qgis_cloud_polygonize.png|600px]] |
# Change the display of the output vector polygon layer {{mitem|text= Layer properties --> Style --> Single Symbol --> Simple Fill --> Fill Style}} from ''Solid'' to ''No Brush''. Change the '''Outline color''' to bright green and increase the '''Outline width'''. | # Change the display of the output vector polygon layer {{mitem|text= Layer properties --> Style --> Single Symbol --> Simple Fill --> Fill Style}} from ''Solid'' to ''No Brush''. Change the '''Outline color''' to bright green and increase the '''Outline width'''. | ||
# Toggle [[File:Qgis_cloud_polygonize.png|300px]] editing [[File:Qgis_vector_edit.png]] of the resulting vector polygon layer. Activate {{tool|text=Select polygons by dragging a box or by single click}} [[File:Qgis_vector_select.png]] which are misclassified as clouds and delete them pressing {{button|text=Del}} on your keyboard. Save your edits [[File:Qgis_vector_save.png]]. | # Toggle [[File:Qgis_cloud_polygonize.png|300px]] editing [[File:Qgis_vector_edit.png]] of the resulting vector polygon layer. Activate {{tool|text=Select polygons by dragging a box or by single click}} [[File:Qgis_vector_select.png]] which are misclassified as clouds and delete them pressing {{button|text=Del}} on your keyboard. Save your edits [[File:Qgis_vector_save.png]]. | ||
Revision as of 10:42, 13 November 2017
Contents |
Sentinel-2 cloud mask
The exclusion of clouds and cloud shadow is an important processing step which is usually done in an early preprocessing stage. The Sentinel-2 products are annotated with Quality Indicators (QI_DATA). In the Level 2A product you may find a file in the folder QI_DATA with the extension _CLD_20m.jp2 (data type: 8bit unsigned integer, spatial resolution 20m) which might be used for masking clouds. The data range is from 0 for high confidence clear sky to 100 for high confidence cloudy (for more details see L2A Product Definition Document).
- Load a multiband Sentinel-2 satellite image (Level 2-A product) Changing Raster Layer Style to display a true color and a false color composite.
- Zoom in to a cloudy part of the image and compare the extent of cloud and cloud shadow in both composites. Which composite is better for displaying clouds?
- The original single band cloud quality indicator band is included in this specifc multiband file as band No. 13. Follow Split stack to extract this band.
- Overlay the QI Cloud band on top of the color composites. Use the Identify Feature Tool for requesting pixel values of the QI band file inside a cloud. Which values represent clouds?
- In (Layer Properties Style load Load the full data range (minimum/maximum values) ). Then change the Style to a Pseudocolor map with interpolation discrete and 10 equal interval classes as shown in the screenshot.
- Double click on a color field of some classes (Layer Properties Style) to open the change color window. Change the opacity from 100% to 0%. Find the best threshold for clouds.
Refining cloud mask
- Create a binary cloud mask (bitmask) where clouds = 1 and non-clouds = 0. Use the Processing tool Orfeo Toolbox --> Miscellaneous --> Band Math. Tick the single band QI layer in the Input Image list list. You may write a conditional ifelse expression using lazy operators. Type into the Expression field: (im1b1>30)?1:0. If pixel values of band 1 of multiband image 1 are larger than 30 then replace with 1 otherwise replace with 0. Mark the output layer in the TOC and click
to stretch the histogram to view extents.
]
- Apply a circular majority filter with a radius of 7 pixels. Open the Processing tool SAGA Toolbox --> Raster filter --> Majority filter. The input Grid is the Output image of the band math operation step. Change the Search mode to Circle with an radius of 7 pixels. Mark the 'Filtered Grid in the TOC and click to stretch the histogram to view extents.
- Open the Processing tool Ordeo Toolboy --> Feature Extraction --> BinaryMorphologicalOperation (dilate). Choose the Filtered Grid as input image. The structuring element type is ball with a radius of 9 pixels. Mark the 'Feature Output Image in the TOC and click to stretch the histogram to view extents.
- Convert the Feature Output Imge from raster to vector format. Raster --> Conversion --> Polygonize. Select an output file name for vector polygons.
- Change the display of the output vector polygon layer Layer properties --> Style --> Single Symbol --> Simple Fill --> Fill Style from Solid to No Brush. Change the Outline color to bright green and increase the Outline width.
- Toggle
editing 
of the resulting vector polygon layer. Activate Select polygons by dragging a box or by single click 
which are misclassified as clouds and delete them pressing Del on your keyboard. Save your edits 
.
